SNP Profiles of ICS 43   View Data

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 Key

 1234567891011121314
_Input profile
CCCCAGAAAAAGAAACAAGGAGAAAACC
1._RUQ_144
CCCCAGAAAAAGAAACAAGGAGAAAACC
2._RUQ_144
______AA_______
3._ICS43
_____CT____AG___
4._RUQ_144
_____CT__AA_____
5._ICS_43
_____CTAA_AA_____
6._RUQ_144
_____CT_GT__AG___
7._ICS_43
_____CCGG_AA_____
8._ICS_43
_____CCGG_AA_____
9._ICS_43
_____CCGG_AA_____
10._ICS_43
_____CCGG_AA_____
11._ICS_43
_____CCGG_AA_____
12._ICS_43
_____CCGG_AA_____
13._ICS_43
_____CCGG_AA_____
14._ICS_43
_____CCGG_AA_____
15._ICS_43
_____CCGG_AA_____
16._GC-01-051-3-06
CCAAAGCCTTCCGGGGAACCGG_CCTT
17._GC-01-051-3-06
CCAAAGCCTTCCGGGGAACCGGTTCCTT
18._GC-01-051-3-06
CCAAAGCCTTCCGGGGAACCGGTTCCTT
19._GC-01-051-3-06
CCAAAGCCTTCCGGGGAACCGGTTCCTT
20._GC-01-051-3-06
CCAAAGCCTTCCGGGGAACCGGTTCCTT
21._GC-01-051-3-06
CCAAAGCCTTCCGGGGAACCGGTTCCTT
22._GC-01-051-3-06
CCAAAGCCTTCCGGGGAACCGGTTCCTT
23._GC-01-051-3-06
CCAAAGCCTTCCGGGGAACCGGTTCCTT
24._GC-01-051-3-06
CCAAAGCCTTCCGGGGAACCGGTTCCTT
25._ICS_43
_____CCGG_AA_____
26._GC-01-051-3-06
CCAAAGCCTTCCGGGGAACCGGTTCCTT
 1516171819202122232425262728
_Input profile
AGAAGGAGAAGGAAAGACAGCCAGACAG
1._RUQ_144
AGAAGGAGAAGGAAAGACAGCCAGACAG
2._RUQ_144
_GT______AC_GG___
3._ICS43
_______CTAC_CC__CT
4._RUQ_144
_GTCC_AA_TT_ACCTGGAGGTCT
5._ICS_43
_GTCC_AA_TT_ACCTGGAGGTCT
6._RUQ_144
_GT_CT___CTACCTGGAGGTCT
7._ICS_43
_TTTT___TT_AACCCCGGTTTT
8._ICS_43
_TTTT___TT_AACCCCGGTTTT
9._ICS_43
_TTTT___TT_AACCCCGGTTTT
10._ICS_43
_TTTT___TT_AACCCCGGTTTT
11._ICS_43
_TTTT___TT_AACCCCGGTTTT
12._ICS_43
_TTTT___TT_AACCCCGGTTTT
13._ICS_43
_TTTT___TT_AACCCCGGTTTT
14._ICS_43
_TTTT___TT_AACCCCGGTTTT
15._ICS_43
_TTTT___TT_AACCCCGGTTTT
16._GC-01-051-3-06
TTTTTTTT_GGTTCCAACCCCGGTTTT
17._GC-01-051-3-06
TTTTTTTT_GGTTCCAACCCCGGTTTT
18._GC-01-051-3-06
TTTTTTTT_GGTTCCAACCCCGGTTTT
19._GC-01-051-3-06
TTTTTTTT_GGTTCCAACCCCGGTTTT
20._GC-01-051-3-06
TTTTTTTT_GGTTCCAACCCCGGTTTT
21._GC-01-051-3-06
TTTTTTTT_GGTTCCAACCCCGGTTTT
22._GC-01-051-3-06
TTTTTTTT_GGTTCCAACCCCGGTTTT
23._GC-01-051-3-06
TTTTTTTT_GGTTCCAACCCCGGTTTT
24._GC-01-051-3-06
TTTTTTTT_GGTTCCAACCCCGGTTTT
25._ICS_43
_TTTT___TT_AACCCCGGTTTT
26._GC-01-051-3-06
TTTTTTTT_GGTTCCAACCCCGGTTTT
 2930313233343536373839404142
_Input profile
AGTTGGACCGGGGGAGGGCCATTTAGAG
1._RUQ_144
AGTTGGACCGGGGGAGGGCCATTTAGAG
2._RUQ_144
_____GG______AG_
3._ICS43
__GGACCGGG_______AG
4._RUQ_144
CT__ACCGGG_CTGG__TT__
5._ICS_43
CT__AC_GG_CTGG__TT__
6._RUQ_144
__GGACCGGG_CT____AGAG
7._ICS_43
CC__AACCGG_CCGG__AA__
8._ICS_43
CC__AACCGG_CCGG__AA__
9._ICS_43
CC__AACCGG_CCGG__AA__
10._ICS_43
CC__AACCGG_CCGG__AA__
11._ICS_43
CC__AACCGG_CCGG__AA__
12._ICS_43
CC__AACCGG_CCGG__AA__
13._ICS_43
CC__AACCGG_CCGG__AA__
14._ICS_43
CC__AACCGG_CCGG__AA__
15._ICS_43
CC__AACCGG_CCGG__AA__
16._GC-01-051-3-06
CCAAGGAACCGGGGCCGGGGAAAAGGGG
17._GC-01-051-3-06
CCAAGGAACCGGGGCCGGGGAAAAGGGG
18._GC-01-051-3-06
CCAAGGAACCGGGGCCGGGGAAAAGGGG
19._GC-01-051-3-06
CCAAGGAACCGGGGCCGGGGAAAAGGGG
20._GC-01-051-3-06
CCAAGGAACCGGGGCCGGGGAAAAGGGG
21._GC-01-051-3-06
CCAAGGAACCGGGGCCGGGGAAAAGGGG
22._GC-01-051-3-06
CCAAGGAACCGGGGCCGGGGAAAAGGGG
23._GC-01-051-3-06
CCAAGGAACCGGGGCCGGGGAAAAGGGG
24._GC-01-051-3-06
CCAAGGAACCGGGGCCGGGGAAAAGGGG
25._ICS_43
CC__AACC__CCGG__AA__
26._GC-01-051-3-06
CCAAGGAACC_GGCCGGGGAAAAGGGG
 4344454647484950515253545556
_Input profile
AAAGAGAGGGATGGAGCCCCGGAAAACC
1._RUQ_144
AAAGAGAGGGATGGAGCCCCGGAAAACC
2._RUQ_144
_________CC___CC
3._ICS43
AACT____CC______CC
4._RUQ_144
AA___AG____CC_TT_CC
5._ICS_43
AA___AG____CC_TT_CC
6._RUQ_144
AA_____CC__CC_TT_CC
7._ICS_43
AA___GG____AA_GG_CC
8._ICS_43
AA___GG____AA_GG_CC
9._ICS_43
AA___GG____AA_GG_CC
10._ICS_43
AA___GG____AA_GG_CC
11._ICS_43
AA___GG____AA_GG_CC
12._ICS_43
AA___GG____AA_GG_CC
13._ICS_43
AA___GG____AA_GG_CC
14._ICS_43
AA___GG____AA_GG_CC
15._ICS_43
AA___GG____AA_GG_CC
16._GC-01-051-3-06
AATTGGGGGGTTCC_CCAAGGGGGGCC
17._GC-01-051-3-06
AATTGGGGGGTTCC_CCAAGGGGGGCC
18._GC-01-051-3-06
AATTGGGGGGTTCC_CCAAGGGGGGCC
19._GC-01-051-3-06
AATTGGGGGGTTCC_CCAAGGGGGGCC
20._GC-01-051-3-06
AATTGGGGGGTTCC_CCAAGGGGGGCC
21._GC-01-051-3-06
AATTGGGGGGTTCC_CCAAGGGGGGCC
22._GC-01-051-3-06
AATTGGGGGGTTCC_CCAAGGGGGGCC
23._GC-01-051-3-06
AATTGGGGGGTTCC_CCAAGGGGGGCC
24._GC-01-051-3-06
AATTGGGGGGTTCC_CCAAGGGGGGCC
25._ICS_43
AA___GG____AA_GG_CC
26._GC-01-051-3-06
AATTGGGGGGTTCC_CCAAGGGGGGCC
 5758596061626364656667686970
_Input profile
AAGGAGAAAGAGACAGAGACACACCCCC
1._RUQ_144
AAGGAGAAAGAGACAGAGACACACCCCC
2._RUQ_144
AA_CT___GTAG____CCTT
3._ICS43
AA_CT______GT____
4._RUQ_144
AA__TT__GT_______
5._ICS_43
AA__TT__GT_______
6._RUQ_144
AA_CTTT__GTAGCT__GTCC_
7._ICS_43
CC__CC__GG_______
8._ICS_43
CC__CC__GG_______
9._ICS_43
CC__CC__GG_______
10._ICS_43
CC__CC__GG_______
11._ICS_43
CC__CC__GG_______
12._ICS_43
CC__CC__GG_______
13._ICS_43
CC__CC__GG_______
14._ICS_43
CC__CC__GG_______
15._ICS_43
CC__CC__GG_______
16._GC-01-051-3-06
CCCCCCCCAAAAGGAATTGGTTTTAAGG
17._GC-01-051-3-06
CCCCCCCCAAAAGGAATTGGTTTTAAGG
18._GC-01-051-3-06
CCCCCCCCAAAAGGAATTGGTTTTAAGG
19._GC-01-051-3-06
CCCCCCCCAAAAGGAATTGGTTTTAAGG
20._GC-01-051-3-06
CCCCCCCCAAAAGGAATTGGTTTTAAGG
21._GC-01-051-3-06
CCCCCCCCAAAAGGAATTGGTTTTAAGG
22._GC-01-051-3-06
CCCCCCCCAAAAGGAATTGGTTTTAAGG
23._GC-01-051-3-06
CCCCCCCCAAAAGGAATTGGTTTTAAGG
24._GC-01-051-3-06
CCCCCCCCAAAAGGAATTGGTTTTAAGG
25._ICS_43
CC__CC__GG_______
26._GC-01-051-3-06
CCCCCCCCAAAAGGAATTGGTTTTAAGG
 717273747576777879808182  
_Input profile
AGCCGGGGGGACAAGGGGAAAGAAX_XX_X
1._RUQ_144
AGCCGGGGGGACAAGGGGAAAGAAX_XX_X
2._RUQ_144
_GG__GG______AAX_XX_X
3._ICS43
AGCCCC_______CT_X_XX_X
4._RUQ_144
_GGCC___TTGG_AACTAAX_XX_X
5._ICS_43
_GGCC___TTGG_AACTAAX_XX_X
6._RUQ_144
_GGCC_-AC_____AAX_XX_X
7._ICS_43
_GGCC___CCGG_AACCGGX_XX_X
8._ICS_43
_GGCC___CCGG_AACCGGX_XX_X
9._ICS_43
_GGCC___CCGG_AACCGGX_XX_X
10._ICS_43
_GGCC___CCGG_AACCGGX_XX_X
11._ICS_43
_GGCC___CCGG_AACCGGX_XX_X
12._ICS_43
_GGCC___CCGG_AACCGGX_XX_X
13._ICS_43
_GGCC___CCGG_AACCGGX_XX_X
14._ICS_43
_GGCC___CCGG_AACCGGX_XX_X
15._ICS_43
_GGCC___CCGG_AACCGGX_XX_X
16._GC-01-051-3-06
_GGCCCCGGCCCCGGCCAACCGGX_XX_X
17._GC-01-051-3-06
_GGCCCCGGCCCCGGCCAACCGGX_XX_X
18._GC-01-051-3-06
_GGCCCCGGCCCCGGCCAACCGGX_XX_X
19._GC-01-051-3-06
_GGCCCCGGCCCCGGCCAACCGGX_XX_X
20._GC-01-051-3-06
_GGCCCCGGCCCCGGCCAACCGGX_XX_X
21._GC-01-051-3-06
_GGCCCCGGCCCCGGCCAACCGGX_XX_X
22._GC-01-051-3-06
_GGCCCCGGCCCCGGCCAACCGGX_XX_X
23._GC-01-051-3-06
_GGCCCCGGCCCCGGCCAACCGGX_XX_X
24._GC-01-051-3-06
_GGCCCCGGCCCCGGCCAACCGGX_XX_X
25._ICS_43
_GGCC___CCGG_AACCGGX_XX_X
26._GC-01-051-3-06
_GGCCCCGGCCCCGGCCAACCGGX_XX_X

Input profile: ICS_43 ICS_43_Fld#_164_Plt#_1

 
USDA-TARS, United States of America
Location: Field: 164, Tree: 1
 Mars, 2018

1._ICS_43 RUQ_144

identical
82 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

2._ICS_43 RUQ_144

64.7 %
17 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

3._ICS_43 ICS43

59.1 %
22 shared markers

Center for Forestry Research and Technology Transfer, Vietnam
Location: CEFORTT
 Jocelyn De Wever et al., 2019

4._ICS_43 RUQ_144

48.5 %
34 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

5._ICS_43

48.5 %
34 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: San Juan Block3
 Dapeng Zhang, 2016

6._ICS_43 RUQ_144

47.2 %
36 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

7._ICS_43

32.4 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1306 1
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

8._ICS_43

32.4 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1306 2
 Dapeng Zhang, 2016

9._ICS_43

32.4 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1306 2
 Dapeng Zhang, 2016

10._ICS_43

32.4 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1306 4
 Dapeng Zhang, 2016

11._ICS_43

32.4 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1306 12
 Dapeng Zhang, 2016

12._ICS_43

32.4 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1306 14
 Dapeng Zhang, 2016

13._ICS_43

32.4 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1306 15
 Dapeng Zhang, 2016

14._ICS_43

32.4 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1306 8 > FP
 Dapeng Zhang, 2016

15._ICS_43

32.4 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1306 9 > FP
 Dapeng Zhang, 2016

16._ICS_43 GC-01-051-3-06

31.4 %
78 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

17._ICS_43 GC-01-051-3-06

31 %
79 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 14
Notes: 14
 Mars, 2018

18._ICS_43 GC-01-051-3-06

31 %
79 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 12
Notes: 12
 Mars, 2018

19._ICS_43 GC-01-051-3-06

31 %
79 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9 > FP1
 Mars, 2018

20._ICS_43 GC-01-051-3-06

31 %
79 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8 > FP3
 Mars, 2018

21._ICS_43 GC-01-051-3-06

31 %
79 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

22._ICS_43 GC-01-051-3-06

31 %
79 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

23._ICS_43 GC-01-051-3-06

31 %
79 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 15
Notes: 15
 Mars, 2018

24._ICS_43 GC-01-051-3-06

31 %
79 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

25._ICS_43

30.3 %
33 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1306 3
 Dapeng Zhang, 2016

26._ICS_43 GC-01-051-3-06

30.1 %
78 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

 


  Key to SNP Markers

1Tcm001s00947643 2Tcm003s01336581 3Tcm003s07402719 4Tcm006s26664133 5TcSNP1034
6TcSNP1060 7TcSNP1062 8TcSNP1063 9TcSNP1075 10TcSNP1096
11TcSNP1111 12TcSNP1149 13TcSNP1156 14TcSNP1175 15TcSNP122
16TcSNP1253 17TcSNP1270 18TcSNP1309 19TcSNP1350 20TcSNP1383
21TcSNP1414 22TcSNP1439 23TcSNP144 24TcSNP1442 25TcSNP1458
26TcSNP1484 27TcSNP150 28TcSNP151 29TcSNP1520 30TcSNP154
31TcSNP174 32TcSNP193 33TcSNP226 34TcSNP230 35TcSNP240
36TcSNP242 37TcSNP25 38TcSNP28 39TcSNP316 40TcSNP32
41TcSNP329 42TcSNP364 43TcSNP372 44TcSNP413 45TcSNP418
46TcSNP42 47TcSNP429 48TcSNP430 49TcSNP448 50TcSNP497
51TcSNP521 52TcSNP529 53TcSNP547 54TcSNP560 55TcSNP561
56TcSNP577 57TcSNP591 58TcSNP60 59TcSNP602 60TcSNP619
61TcSNP653 62TcSNP689 63TcSNP723 64TcSNP731 65TcSNP75
66TcSNP751 67TcSNP776 68TcSNP799 69TcSNP823 70TcSNP836
71TcSNP860 72TcSNP872 73TcSNP891 74TcSNP894 75TcSNP899
76TcSNP90 77TcSNP917 78TcSNP929 79TcSNP944 80TcSNP953
81TcSNP994 82TcSNP998